Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CtcfQ61164 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.73■□□□□ 0.59
CtcfQ61164 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.73■□□□□ 0.59
CtcfQ61164 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.73■□□□□ 0.59
CtcfQ61164 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CtcfQ61164 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.73■□□□□ 0.59
CtcfQ61164 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CtcfQ61164 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CtcfQ61164 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CtcfQ61164 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CtcfQ61164 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Gm16401-202ENSMUST00000197463 2074 ntBASIC18.72■□□□□ 0.59
CtcfQ61164 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.72■□□□□ 0.59
CtcfQ61164 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Gm10138-203ENSMUST00000206952 366 ntBASIC18.72■□□□□ 0.59
CtcfQ61164 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.72■□□□□ 0.59
CtcfQ61164 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CtcfQ61164 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.72■□□□□ 0.59
CtcfQ61164 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CtcfQ61164 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CtcfQ61164 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC18.71■□□□□ 0.59
CtcfQ61164 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CtcfQ61164 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CtcfQ61164 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.71■□□□□ 0.58
CtcfQ61164 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CtcfQ61164 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CtcfQ61164 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CtcfQ61164 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.7■□□□□ 0.58
CtcfQ61164 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CtcfQ61164 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CtcfQ61164 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CtcfQ61164 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CtcfQ61164 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CtcfQ61164 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.7■□□□□ 0.58
CtcfQ61164 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CtcfQ61164 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CtcfQ61164 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC18.69■□□□□ 0.58
CtcfQ61164 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CtcfQ61164 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.69■□□□□ 0.58
CtcfQ61164 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms