Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Gm18284-201ENSMUST00000172604 624 ntBASIC16.23■□□□□ 0.19
Nr1h4Q60641 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC16.22■□□□□ 0.19
Nr1h4Q60641 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Mir5133-201ENSMUST00000174955 77 ntBASIC16.22■□□□□ 0.19
Nr1h4Q60641 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.22■□□□□ 0.19
Nr1h4Q60641 Gm42569-201ENSMUST00000200539 472 ntBASIC16.22■□□□□ 0.19
Nr1h4Q60641 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC16.22■□□□□ 0.19
Nr1h4Q60641 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Gm10654-201ENSMUST00000098653 1633 ntBASIC16.22■□□□□ 0.19
Nr1h4Q60641 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Zkscan3-208ENSMUST00000224820 5398 ntBASIC16.22■□□□□ 0.19
Nr1h4Q60641 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Nr1h4Q60641 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Mtag2-201ENSMUST00000058665 714 ntBASIC16.21■□□□□ 0.19
Nr1h4Q60641 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC16.21■□□□□ 0.19
Nr1h4Q60641 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nr1h4Q60641 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.18
Nr1h4Q60641 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Nr1h4Q60641 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Nr1h4Q60641 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Nr1h4Q60641 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.2■□□□□ 0.18
Nr1h4Q60641 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nr1h4Q60641 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.19■□□□□ 0.18
Nr1h4Q60641 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Nr1h4Q60641 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms