Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3bQ3ULL6 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC18.21■□□□□ 0.51
Upf3bQ3ULL6 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Upf3bQ3ULL6 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Upf3bQ3ULL6 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Upf3bQ3ULL6 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Upf3bQ3ULL6 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Gm16499-203ENSMUST00000204633 2177 ntBASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Gm13559-201ENSMUST00000120476 863 ntBASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3bQ3ULL6 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Gm43799-201ENSMUST00000201845 579 ntBASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3bQ3ULL6 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3bQ3ULL6 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3bQ3ULL6 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3bQ3ULL6 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3bQ3ULL6 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3bQ3ULL6 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.17■□□□□ 0.5
Upf3bQ3ULL6 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Upf3bQ3ULL6 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3bQ3ULL6 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3bQ3ULL6 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3bQ3ULL6 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Gm2274-201ENSMUST00000184539 609 ntBASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3bQ3ULL6 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3bQ3ULL6 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms