Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Gm42670-201ENSMUST00000201816 1292 ntBASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Ddb1Q3U1J4 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Ddb1Q3U1J4 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddb1Q3U1J4 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddb1Q3U1J4 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddb1Q3U1J4 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC21.59■■□□□ 1.05
Ddb1Q3U1J4 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddb1Q3U1J4 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddb1Q3U1J4 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddb1Q3U1J4 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddb1Q3U1J4 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddb1Q3U1J4 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddb1Q3U1J4 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Ddb1Q3U1J4 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Ddb1Q3U1J4 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Ddb1Q3U1J4 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
Ddb1Q3U1J4 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddb1Q3U1J4 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddb1Q3U1J4 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddb1Q3U1J4 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Gm2756-201ENSMUST00000195851 400 ntBASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddb1Q3U1J4 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Gm23935-201ENSMUST00000102303 57 ntBASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Gm24270-201ENSMUST00000102326 57 ntBASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Gm24245-201ENSMUST00000157318 57 ntBASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddb1Q3U1J4 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Rbfox2-207ENSMUST00000227533 1041 ntBASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddb1Q3U1J4 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddb1Q3U1J4 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms