Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 AC122351.1-201ENSMUST00000220467 126 ntBASIC14.7□□□□□ -0.06
Nkx3-1P97436 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nkx3-1P97436 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC14.68□□□□□ -0.06
Nkx3-1P97436 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC14.68□□□□□ -0.06
Nkx3-1P97436 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Gm7153-201ENSMUST00000117092 455 ntBASIC14.68□□□□□ -0.06
Nkx3-1P97436 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Gm45328-201ENSMUST00000210942 917 ntBASIC14.68□□□□□ -0.06
Nkx3-1P97436 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Gm7461-201ENSMUST00000058918 827 ntBASIC14.68□□□□□ -0.06
Nkx3-1P97436 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
Nkx3-1P97436 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nkx3-1P97436 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Gm42939-201ENSMUST00000197514 2205 ntBASIC14.67□□□□□ -0.06
Nkx3-1P97436 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nkx3-1P97436 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC14.66□□□□□ -0.06
Nkx3-1P97436 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Gm27357-201ENSMUST00000183754 135 ntBASIC14.66□□□□□ -0.06
Nkx3-1P97436 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Umpk-ps-201ENSMUST00000211897 827 ntBASIC14.66□□□□□ -0.06
Nkx3-1P97436 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Nkx3-1P97436 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms