Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Shmt1P50431 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC17.98■□□□□ 0.47
Shmt1P50431 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.98■□□□□ 0.47
Shmt1P50431 Gm18101-201ENSMUST00000215769 548 ntBASIC17.98■□□□□ 0.47
Shmt1P50431 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Shmt1P50431 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Shmt1P50431 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Shmt1P50431 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.97■□□□□ 0.47
Shmt1P50431 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Shmt1P50431 Gm23634-201ENSMUST00000175071 91 ntBASIC17.97■□□□□ 0.47
Shmt1P50431 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.97■□□□□ 0.47
Shmt1P50431 Gm21559-201ENSMUST00000220638 855 ntBASIC17.97■□□□□ 0.47
Shmt1P50431 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Shmt1P50431 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Shmt1P50431 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Gm8587-201ENSMUST00000076538 843 ntBASIC17.97■□□□□ 0.47
Shmt1P50431 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC17.97■□□□□ 0.47
Shmt1P50431 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Shmt1P50431 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Shmt1P50431 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.96■□□□□ 0.47
Shmt1P50431 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.96■□□□□ 0.47
Shmt1P50431 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Shmt1P50431 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Shmt1P50431 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.96■□□□□ 0.47
Shmt1P50431 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Shmt1P50431 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Shmt1P50431 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Shmt1P50431 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Shmt1P50431 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Shmt1P50431 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Shmt1P50431 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Shmt1P50431 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.95■□□□□ 0.46
Shmt1P50431 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Gm7367-201ENSMUST00000057611 492 ntBASIC17.95■□□□□ 0.46
Shmt1P50431 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Shmt1P50431 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Shmt1P50431 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
Shmt1P50431 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.95■□□□□ 0.46
Shmt1P50431 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
Shmt1P50431 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Gm10819-201ENSMUST00000099988 561 ntBASIC17.94■□□□□ 0.46
Shmt1P50431 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Shmt1P50431 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.93■□□□□ 0.46
Shmt1P50431 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Shmt1P50431 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms