Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Rfx1P48377 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Rfx1P48377 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Rfx1P48377 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Rfx1P48377 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.36■□□□□ 0.85
Rfx1P48377 Gm26524-201ENSMUST00000192339 390 ntBASIC20.36■□□□□ 0.85
Rfx1P48377 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.36■□□□□ 0.85
Rfx1P48377 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC20.36■□□□□ 0.85
Rfx1P48377 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Rfx1P48377 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC20.36■□□□□ 0.85
Rfx1P48377 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx1P48377 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC20.35■□□□□ 0.85
Rfx1P48377 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Gm15847-201ENSMUST00000121417 1065 ntBASIC20.35■□□□□ 0.85
Rfx1P48377 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Rfx1P48377 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx1P48377 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
Rfx1P48377 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC20.34■□□□□ 0.85
Rfx1P48377 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Rfx1P48377 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Rfx1P48377 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Rfx1P48377 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC20.34■□□□□ 0.85
Rfx1P48377 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx1P48377 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx1P48377 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Rfx1P48377 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx1P48377 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Rfx1P48377 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.33■□□□□ 0.85
Rfx1P48377 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx1P48377 Rab3c-203ENSMUST00000224180 967 ntBASIC20.33■□□□□ 0.85
Rfx1P48377 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx1P48377 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Rfx1P48377 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx1P48377 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx1P48377 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx1P48377 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx1P48377 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx1P48377 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx1P48377 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC20.32■□□□□ 0.84
Rfx1P48377 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Gm42569-201ENSMUST00000200539 472 ntBASIC20.32■□□□□ 0.84
Rfx1P48377 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC20.32■□□□□ 0.84
Rfx1P48377 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.32■□□□□ 0.84
Rfx1P48377 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Rfx1P48377 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx1P48377 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx1P48377 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms