Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col2a1P28481 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col2a1P28481 Gm45203-201ENSMUST00000206384 1831 ntBASIC19.29■□□□□ 0.68
Col2a1P28481 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col2a1P28481 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col2a1P28481 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col2a1P28481 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Col2a1P28481 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col2a1P28481 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col2a1P28481 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col2a1P28481 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col2a1P28481 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col2a1P28481 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC19.28■□□□□ 0.68
Col2a1P28481 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC19.28■□□□□ 0.68
Col2a1P28481 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Rprl3-201ENSMUST00000157400 290 ntBASIC19.28■□□□□ 0.68
Col2a1P28481 AC153794.1-201ENSMUST00000169148 126 ntBASIC19.28■□□□□ 0.68
Col2a1P28481 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col2a1P28481 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC19.28■□□□□ 0.68
Col2a1P28481 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col2a1P28481 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col2a1P28481 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col2a1P28481 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col2a1P28481 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col2a1P28481 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col2a1P28481 Gm27459-201ENSMUST00000184860 107 ntBASIC19.27■□□□□ 0.67
Col2a1P28481 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC19.27■□□□□ 0.67
Col2a1P28481 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
Col2a1P28481 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col2a1P28481 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col2a1P28481 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col2a1P28481 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col2a1P28481 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col2a1P28481 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC19.26■□□□□ 0.67
Col2a1P28481 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
Col2a1P28481 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
Col2a1P28481 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
Col2a1P28481 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC19.26■□□□□ 0.67
Col2a1P28481 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col2a1P28481 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col2a1P28481 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col2a1P28481 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Gm15442-201ENSMUST00000117905 1527 ntBASIC19.25■□□□□ 0.67
Col2a1P28481 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.25■□□□□ 0.67
Col2a1P28481 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Col2a1P28481 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col2a1P28481 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC19.24■□□□□ 0.67
Col2a1P28481 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
Col2a1P28481 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC19.24■□□□□ 0.67
Col2a1P28481 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC19.24■□□□□ 0.67
Col2a1P28481 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.24■□□□□ 0.67
Col2a1P28481 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col2a1P28481 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col2a1P28481 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col2a1P28481 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col2a1P28481 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col2a1P28481 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col2a1P28481 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col2a1P28481 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col2a1P28481 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col2a1P28481 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col2a1P28481 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Col2a1P28481 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
Col2a1P28481 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Col2a1P28481 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col2a1P28481 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms