Protein–RNA interactions for Protein: O55055

Trdmt1, tRNA (cytosine(38)-C(5))-methyltransferase, mousemouse

Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trdmt1O55055 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
Trdmt1O55055 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Trdmt1O55055 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC18.7■□□□□ 0.58
Trdmt1O55055 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Trdmt1O55055 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.7■□□□□ 0.58
Trdmt1O55055 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Gm6443-201ENSMUST00000203599 874 ntBASIC18.7■□□□□ 0.58
Trdmt1O55055 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC18.7■□□□□ 0.58
Trdmt1O55055 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trdmt1O55055 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
Trdmt1O55055 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.69■□□□□ 0.58
Trdmt1O55055 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trdmt1O55055 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trdmt1O55055 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trdmt1O55055 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trdmt1O55055 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC18.69■□□□□ 0.58
Trdmt1O55055 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
Trdmt1O55055 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC18.69■□□□□ 0.58
Trdmt1O55055 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trdmt1O55055 Gm43514-201ENSMUST00000198852 424 ntBASIC18.69■□□□□ 0.58
Trdmt1O55055 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trdmt1O55055 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.69■□□□□ 0.58
Trdmt1O55055 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trdmt1O55055 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trdmt1O55055 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trdmt1O55055 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC18.68■□□□□ 0.58
Trdmt1O55055 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.68■□□□□ 0.58
Trdmt1O55055 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trdmt1O55055 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trdmt1O55055 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trdmt1O55055 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.68■□□□□ 0.58
Trdmt1O55055 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC18.67■□□□□ 0.58
Trdmt1O55055 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
Trdmt1O55055 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC18.67■□□□□ 0.58
Trdmt1O55055 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Trdmt1O55055 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Trdmt1O55055 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trdmt1O55055 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trdmt1O55055 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trdmt1O55055 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trdmt1O55055 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trdmt1O55055 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
Trdmt1O55055 Gm11452-201ENSMUST00000122376 690 ntBASIC18.66■□□□□ 0.58
Trdmt1O55055 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC18.66■□□□□ 0.58
Trdmt1O55055 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trdmt1O55055 AC153794.1-201ENSMUST00000169148 126 ntBASIC18.66■□□□□ 0.58
Trdmt1O55055 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC18.66■□□□□ 0.58
Trdmt1O55055 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trdmt1O55055 AC159301.1-201ENSMUST00000225130 1182 ntBASIC18.66■□□□□ 0.58
Trdmt1O55055 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trdmt1O55055 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC18.66■□□□□ 0.58
Trdmt1O55055 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trdmt1O55055 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trdmt1O55055 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trdmt1O55055 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trdmt1O55055 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trdmt1O55055 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trdmt1O55055 Gm7935-201ENSMUST00000100555 1278 ntBASIC18.65■□□□□ 0.58
Trdmt1O55055 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trdmt1O55055 Gm10052-201ENSMUST00000168019 960 ntBASIC18.65■□□□□ 0.58
Trdmt1O55055 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trdmt1O55055 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Trdmt1O55055 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
Trdmt1O55055 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms