Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC092111.2-201ENST00000611627 1414 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AP000547.3-204ENST00000588548 2523 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC018628.1-201ENST00000624147 3819 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 SNX18P3-202ENST00000565670 1750 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 RN7SKP191-201ENST00000364713 306 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 RN7SKP91-201ENST00000410852 288 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC006333.1-204ENST00000429396 648 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC128677.1-201ENST00000436016 442 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 E2F6P3-201ENST00000441743 743 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC097359.1-201ENST00000447946 463 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 MED28P7-201ENST00000456611 530 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AP000805.1-201ENST00000471604 784 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 RN7SL177P-201ENST00000476596 299 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 RPS4XP14-201ENST00000493072 781 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC021146.11-201ENST00000503319 491 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC100854.1-201ENST00000520351 341 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC067805.1-201ENST00000559344 470 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 RN7SL270P-201ENST00000579643 281 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC011445.2-201ENST00000599274 173 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 RPS4XP21-201ENST00000603814 750 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 RN7SL126P-201ENST00000616400 299 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AP005212.3-201ENST00000619964 528 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC073857.1-201ENST00000625082 1054 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC110373.1-201ENST00000505994 3505 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC020633.1-201ENST00000468439 2247 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 CDY19P-201ENST00000411668 1613 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 CDY18P-201ENST00000438294 1609 ntBASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 CR382285.2-201ENST00000624662 1495 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 FUNDC2P3-201ENST00000334716 533 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 RNU4-23P-201ENST00000362839 140 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 SNORA70.5-201ENST00000365519 135 ntBASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.47□□□□□ -1.53
PDLIM3Q53GG5 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms