Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIM2P55344 AL359091.1-201ENST00000449048 1734 ntBASIC5.85□□□□□ -1.47
LIM2P55344 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIM2P55344 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIM2P55344 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
LIM2P55344 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIM2P55344 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
LIM2P55344 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.84□□□□□ -1.47
LIM2P55344 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 RNA5SP232-201ENST00000364144 119 ntBASIC5.84□□□□□ -1.47
LIM2P55344 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.84□□□□□ -1.47
LIM2P55344 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.84□□□□□ -1.47
LIM2P55344 RPL23AP18-201ENST00000416139 468 ntBASIC5.84□□□□□ -1.47
LIM2P55344 AL354893.1-201ENST00000433735 348 ntBASIC5.84□□□□□ -1.47
LIM2P55344 OR3D1P-201ENST00000438288 955 ntBASIC5.84□□□□□ -1.47
LIM2P55344 AC010240.2-201ENST00000445363 1205 ntBASIC5.84□□□□□ -1.47
LIM2P55344 EEF1B2P3-201ENST00000447718 678 ntBASIC5.84□□□□□ -1.47
LIM2P55344 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.84□□□□□ -1.47
LIM2P55344 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
LIM2P55344 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.84□□□□□ -1.47
LIM2P55344 OR4A6P-201ENST00000534364 970 ntBASIC5.84□□□□□ -1.47
LIM2P55344 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.84□□□□□ -1.47
LIM2P55344 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.84□□□□□ -1.47
LIM2P55344 MIR3154-201ENST00000577829 84 ntBASIC5.84□□□□□ -1.47
LIM2P55344 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.84□□□□□ -1.47
LIM2P55344 AC008555.7-201ENST00000605008 583 ntBASIC5.84□□□□□ -1.47
LIM2P55344 AL359091.2-201ENST00000609303 556 ntBASIC5.84□□□□□ -1.47
LIM2P55344 AL137067.2-201ENST00000621202 131 ntBASIC5.84□□□□□ -1.47
LIM2P55344 AC073488.6-201ENST00000632293 754 ntBASIC5.84□□□□□ -1.47
LIM2P55344 AL357140.4-201ENST00000636827 412 ntBASIC5.84□□□□□ -1.47
LIM2P55344 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.84□□□□□ -1.47
LIM2P55344 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 AC011416.1-201ENST00000514947 1732 ntBASIC5.84□□□□□ -1.47
LIM2P55344 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
LIM2P55344 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
LIM2P55344 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
LIM2P55344 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
LIM2P55344 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIM2P55344 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.84□□□□□ -1.48
LIM2P55344 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
LIM2P55344 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
LIM2P55344 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.48
LIM2P55344 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.84□□□□□ -1.48
LIM2P55344 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.83□□□□□ -1.48
LIM2P55344 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.83□□□□□ -1.48
LIM2P55344 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
LIM2P55344 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
LIM2P55344 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.83□□□□□ -1.48
LIM2P55344 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
LIM2P55344 AC092724.1-201ENST00000624623 3397 ntBASIC5.83□□□□□ -1.48
LIM2P55344 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.83□□□□□ -1.48
LIM2P55344 NR1H5P-201ENST00000452683 1377 ntBASIC5.83□□□□□ -1.48
LIM2P55344 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.83□□□□□ -1.48
LIM2P55344 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
LIM2P55344 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.48
LIM2P55344 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
LIM2P55344 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
LIM2P55344 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
LIM2P55344 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
LIM2P55344 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.83□□□□□ -1.48
LIM2P55344 RNU6-233P-201ENST00000410845 141 ntBASIC5.83□□□□□ -1.48
LIM2P55344 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.83□□□□□ -1.48
LIM2P55344 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.83□□□□□ -1.48
LIM2P55344 RPSAP65-201ENST00000429660 595 ntBASIC5.83□□□□□ -1.48
LIM2P55344 AC079922.1-201ENST00000443291 359 ntBASIC5.83□□□□□ -1.48
LIM2P55344 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.83□□□□□ -1.48
LIM2P55344 HMGB1P7-201ENST00000450921 612 ntBASIC5.83□□□□□ -1.48
LIM2P55344 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
LIM2P55344 RN7SL254P-201ENST00000460609 284 ntBASIC5.83□□□□□ -1.48
LIM2P55344 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC5.83□□□□□ -1.48
LIM2P55344 AC091874.2-201ENST00000505889 720 ntBASIC5.83□□□□□ -1.48
LIM2P55344 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.83□□□□□ -1.48
LIM2P55344 AC018797.1-201ENST00000510791 255 ntBASIC5.83□□□□□ -1.48
LIM2P55344 MAST4-IT1-201ENST00000514241 658 ntBASIC5.83□□□□□ -1.48
LIM2P55344 OR6M2P-201ENST00000529831 871 ntBASIC5.83□□□□□ -1.48
LIM2P55344 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.83□□□□□ -1.48
LIM2P55344 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.83□□□□□ -1.48
LIM2P55344 AC090651.1-201ENST00000567865 634 ntBASIC5.83□□□□□ -1.48
LIM2P55344 MIR4701-201ENST00000583094 63 ntBASIC5.83□□□□□ -1.48
LIM2P55344 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
LIM2P55344 AC009779.8-202ENST00000607990 932 ntBASIC5.83□□□□□ -1.48
LIM2P55344 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.83□□□□□ -1.48
LIM2P55344 MIR6780B-201ENST00000610307 79 ntBASIC5.83□□□□□ -1.48
LIM2P55344 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.83□□□□□ -1.48
LIM2P55344 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.83□□□□□ -1.48
LIM2P55344 AC024587.1-201ENST00000505925 2157 ntBASIC5.83□□□□□ -1.48
LIM2P55344 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
LIM2P55344 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
LIM2P55344 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.83□□□□□ -1.48
LIM2P55344 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIM2P55344 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.82□□□□□ -1.48
LIM2P55344 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms