Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vps28Q9D1C8 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Gm4217-201ENSMUST00000182243 1002 ntBASIC17.47■□□□□ 0.39
Vps28Q9D1C8 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 AC120002.2-201ENSMUST00000220205 773 ntBASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Il3ra-202ENSMUST00000223589 738 ntBASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Vps28Q9D1C8 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 AC125311.2-201ENSMUST00000227477 1940 ntBASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vps28Q9D1C8 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Mir5130-201ENSMUST00000175160 84 ntBASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vps28Q9D1C8 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Vps28Q9D1C8 Gm45058-201ENSMUST00000205810 766 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms