Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Gm37292-201ENSMUST00000192062 758 ntBASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Gm12382-201ENSMUST00000122005 922 ntBASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Timm23-208ENSMUST00000226683 750 ntBASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Odf3b-204ENSMUST00000227834 930 ntBASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smc1aQ9CU62 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Haglr-201ENSMUST00000100000 2085 ntBASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Smc1aQ9CU62 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smc1aQ9CU62 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Gm13559-201ENSMUST00000120476 863 ntBASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Mir6349-201ENSMUST00000184059 97 ntBASIC19.02■□□□□ 0.64
Smc1aQ9CU62 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC19.02■□□□□ 0.64
Smc1aQ9CU62 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Smc1aQ9CU62 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Smc1aQ9CU62 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
Smc1aQ9CU62 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smc1aQ9CU62 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Smc1aQ9CU62 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Smc1aQ9CU62 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Smc1aQ9CU62 Gm5421-201ENSMUST00000181698 2354 ntBASIC19■□□□□ 0.63
Smc1aQ9CU62 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Smc1aQ9CU62 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms