Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Gm27275-201ENSMUST00000184318 272 ntBASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Cdk5rap3Q99LM2 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdk5rap3Q99LM2 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Gm4974-201ENSMUST00000209974 875 ntBASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cdk5rap3Q99LM2 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cdk5rap3Q99LM2 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cdk5rap3Q99LM2 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Gm37292-201ENSMUST00000192062 758 ntBASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdk5rap3Q99LM2 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Cdk5rap3Q99LM2 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdk5rap3Q99LM2 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdk5rap3Q99LM2 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms