Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Gm44450-201ENSMUST00000199528 114 ntBASIC17.98■□□□□ 0.47
Clp1Q99LI9 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Rps4l-201ENSMUST00000071745 943 ntBASIC17.98■□□□□ 0.47
Clp1Q99LI9 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Clp1Q99LI9 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Clp1Q99LI9 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.97■□□□□ 0.47
Clp1Q99LI9 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Gm25925-201ENSMUST00000158314 306 ntBASIC17.97■□□□□ 0.47
Clp1Q99LI9 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Gm29707-201ENSMUST00000196325 491 ntBASIC17.97■□□□□ 0.47
Clp1Q99LI9 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Clp1Q99LI9 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.96■□□□□ 0.47
Clp1Q99LI9 Gm12644-201ENSMUST00000119935 606 ntBASIC17.96■□□□□ 0.47
Clp1Q99LI9 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Clp1Q99LI9 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Gm13312-201ENSMUST00000119631 718 ntBASIC17.95■□□□□ 0.46
Clp1Q99LI9 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.95■□□□□ 0.46
Clp1Q99LI9 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.95■□□□□ 0.46
Clp1Q99LI9 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Gm5712-201ENSMUST00000199748 1043 ntBASIC17.95■□□□□ 0.46
Clp1Q99LI9 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.95■□□□□ 0.46
Clp1Q99LI9 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Clp1Q99LI9 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Clp1Q99LI9 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Clp1Q99LI9 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Clp1Q99LI9 Rprl3-201ENSMUST00000157400 290 ntBASIC17.94■□□□□ 0.46
Clp1Q99LI9 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Clp1Q99LI9 Gm27525-201ENSMUST00000184465 107 ntBASIC17.94■□□□□ 0.46
Clp1Q99LI9 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC17.94■□□□□ 0.46
Clp1Q99LI9 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Clp1Q99LI9 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Clp1Q99LI9 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC17.94■□□□□ 0.46
Clp1Q99LI9 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.94■□□□□ 0.46
Clp1Q99LI9 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Clp1Q99LI9 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Clp1Q99LI9 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 58.4 ms