Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Gm10033-202ENSMUST00000211874 928 ntBASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc28bQ8CEG5 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Gm26917-202ENSMUST00000192833 3329 ntBASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ccdc28bQ8CEG5 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Gm11620-201ENSMUST00000118770 1845 ntBASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Gm16499-203ENSMUST00000204633 2177 ntBASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Mir2861-201ENSMUST00000175539 82 ntBASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28bQ8CEG5 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Ccdc28bQ8CEG5 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ccdc28bQ8CEG5 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.28
Ccdc28bQ8CEG5 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Gm13401-201ENSMUST00000117074 291 ntBASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC16.82■□□□□ 0.28
Ccdc28bQ8CEG5 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms