Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Atg4aQ8C9S8 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.73■□□□□ 0.91
Atg4aQ8C9S8 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Atg4aQ8C9S8 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Wnt10b-204ENSMUST00000226655 1807 ntBASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Mir6982-201ENSMUST00000184354 68 ntBASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Atg4aQ8C9S8 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Atg4aQ8C9S8 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
Atg4aQ8C9S8 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Gm18958-201ENSMUST00000174258 762 ntBASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Atg4aQ8C9S8 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Atg4aQ8C9S8 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Gm36858-201ENSMUST00000194501 2391 ntBASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Atg4aQ8C9S8 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Atg4aQ8C9S8 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms