Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.97■□□□□ 0.63
Smarca1Q6PGB8 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Gm7889-201ENSMUST00000185591 958 ntBASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Smarca1Q6PGB8 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smarca1Q6PGB8 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smarca1Q6PGB8 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smarca1Q6PGB8 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smarca1Q6PGB8 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smarca1Q6PGB8 Haglr-201ENSMUST00000100000 2085 ntBASIC18.91■□□□□ 0.62
Smarca1Q6PGB8 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smarca1Q6PGB8 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms