Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sh3rf1Q69ZI1 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sh3rf1Q69ZI1 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Mtag2-201ENSMUST00000058665 714 ntBASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sh3rf1Q69ZI1 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sh3rf1Q69ZI1 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Sh3rf1Q69ZI1 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.27■□□□□ 0.35
Sh3rf1Q69ZI1 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Sh3rf1Q69ZI1 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Dancr-204ENSMUST00000132389 2347 ntBASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms