Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Nr1h4Q60641 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nr1h4Q60641 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Nr1h4Q60641 Gm28265-201ENSMUST00000188201 2319 ntBASIC16.28■□□□□ 0.2
Nr1h4Q60641 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nr1h4Q60641 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nr1h4Q60641 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nr1h4Q60641 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Nr1h4Q60641 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Nr1h4Q60641 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nr1h4Q60641 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nr1h4Q60641 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.27■□□□□ 0.2
Nr1h4Q60641 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nr1h4Q60641 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Nr1h4Q60641 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Nr1h4Q60641 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
Nr1h4Q60641 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Nr1h4Q60641 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Gm13216-201ENSMUST00000117145 591 ntBASIC16.25■□□□□ 0.19
Nr1h4Q60641 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC16.25■□□□□ 0.19
Nr1h4Q60641 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nr1h4Q60641 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Gm11620-201ENSMUST00000118770 1845 ntBASIC16.24■□□□□ 0.19
Nr1h4Q60641 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC16.24■□□□□ 0.19
Nr1h4Q60641 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Gm13148-201ENSMUST00000118892 745 ntBASIC16.24■□□□□ 0.19
Nr1h4Q60641 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Gm26571-201ENSMUST00000181399 666 ntBASIC16.24■□□□□ 0.19
Nr1h4Q60641 Gm10138-203ENSMUST00000206952 366 ntBASIC16.24■□□□□ 0.19
Nr1h4Q60641 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Gm16499-203ENSMUST00000204633 2177 ntBASIC16.24■□□□□ 0.19
Nr1h4Q60641 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Nr1h4Q60641 Gm11841-201ENSMUST00000117060 1963 ntBASIC16.24■□□□□ 0.19
Nr1h4Q60641 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.23■□□□□ 0.19
Nr1h4Q60641 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC16.23■□□□□ 0.19
Nr1h4Q60641 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms