Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Upf3aQ3ULJ3 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Phf7-203ENSMUST00000226565 1971 ntBASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Gm12895-201ENSMUST00000122214 226 ntBASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Upf3aQ3ULJ3 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Gm27459-201ENSMUST00000184860 107 ntBASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 AC164629.2-201ENSMUST00000217916 270 ntBASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 AC125311.2-201ENSMUST00000227477 1940 ntBASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3aQ3ULJ3 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Upf3aQ3ULJ3 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.89■□□□□ 0.46
Upf3aQ3ULJ3 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Upf3aQ3ULJ3 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC17.89■□□□□ 0.45
Upf3aQ3ULJ3 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Gm28659-201ENSMUST00000188013 759 ntBASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3aQ3ULJ3 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms