Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Gm43575-201ENSMUST00000196420 516 ntBASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ddb1Q3U1J4 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Gm45141-201ENSMUST00000206502 1888 ntBASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Wnt10b-204ENSMUST00000226655 1807 ntBASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Gm15467-201ENSMUST00000120582 445 ntBASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Ddb1Q3U1J4 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Ddb1Q3U1J4 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC21.64■■□□□ 1.06
Ddb1Q3U1J4 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ddb1Q3U1J4 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 AC154527.4-201ENSMUST00000224364 1667 ntBASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ddb1Q3U1J4 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 CT943659.1-201ENSMUST00000215459 326 ntBASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Psmb5-202ENSMUST00000227257 622 ntBASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddb1Q3U1J4 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Ddb1Q3U1J4 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Gm35558-201ENSMUST00000222675 2219 ntBASIC21.61■■□□□ 1.05
Ddb1Q3U1J4 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms