Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
Col6a1Q04857 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.8■□□□□ 0.6
Col6a1Q04857 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Col6a1Q04857 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Gm27525-201ENSMUST00000184465 107 ntBASIC18.8■□□□□ 0.6
Col6a1Q04857 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Col6a1Q04857 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Col6a1Q04857 Actl10-202ENSMUST00000226583 1501 ntBASIC18.79■□□□□ 0.6
Col6a1Q04857 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.79■□□□□ 0.6
Col6a1Q04857 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Col6a1Q04857 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Col6a1Q04857 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Gm43073-201ENSMUST00000198200 1189 ntBASIC18.79■□□□□ 0.6
Col6a1Q04857 Gm43347-201ENSMUST00000200226 580 ntBASIC18.79■□□□□ 0.6
Col6a1Q04857 AC132104.2-201ENSMUST00000215011 266 ntBASIC18.79■□□□□ 0.6
Col6a1Q04857 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a1Q04857 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Col6a1Q04857 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Fst-202ENSMUST00000223640 2612 ntBASIC18.78■□□□□ 0.6
Col6a1Q04857 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.78■□□□□ 0.6
Col6a1Q04857 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.78■□□□□ 0.6
Col6a1Q04857 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.78■□□□□ 0.6
Col6a1Q04857 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.78■□□□□ 0.6
Col6a1Q04857 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Col6a1Q04857 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Col6a1Q04857 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.78■□□□□ 0.6
Col6a1Q04857 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a1Q04857 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
Col6a1Q04857 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Col6a1Q04857 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.77■□□□□ 0.6
Col6a1Q04857 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 Gm15794-201ENSMUST00000120182 631 ntBASIC18.77■□□□□ 0.6
Col6a1Q04857 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC18.77■□□□□ 0.6
Col6a1Q04857 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.77■□□□□ 0.6
Col6a1Q04857 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a1Q04857 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col6a1Q04857 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col6a1Q04857 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col6a1Q04857 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a1Q04857 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.76■□□□□ 0.59
Col6a1Q04857 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a1Q04857 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Col6a1Q04857 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.76■□□□□ 0.59
Col6a1Q04857 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a1Q04857 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a1Q04857 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a1Q04857 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a1Q04857 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a1Q04857 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a1Q04857 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a1Q04857 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Gm9194-201ENSMUST00000220749 1447 ntBASIC18.75■□□□□ 0.59
Col6a1Q04857 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Col6a1Q04857 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Col6a1Q04857 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Col6a1Q04857 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC18.75■□□□□ 0.59
Col6a1Q04857 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms