Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Col8a1Q00780 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC14.51□□□□□ -0.09
Col8a1Q00780 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
Col8a1Q00780 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Col8a1Q00780 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC14.51□□□□□ -0.09
Col8a1Q00780 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.51□□□□□ -0.09
Col8a1Q00780 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC14.51□□□□□ -0.09
Col8a1Q00780 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC14.51□□□□□ -0.09
Col8a1Q00780 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC14.51□□□□□ -0.09
Col8a1Q00780 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC14.51□□□□□ -0.09
Col8a1Q00780 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col8a1Q00780 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC14.51□□□□□ -0.09
Col8a1Q00780 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
Col8a1Q00780 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
Col8a1Q00780 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
Col8a1Q00780 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC14.5□□□□□ -0.09
Col8a1Q00780 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Gm37025-201ENSMUST00000195159 829 ntBASIC14.5□□□□□ -0.09
Col8a1Q00780 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC14.5□□□□□ -0.09
Col8a1Q00780 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Col8a1Q00780 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col8a1Q00780 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Col8a1Q00780 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Col8a1Q00780 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC14.49□□□□□ -0.09
Col8a1Q00780 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14.49□□□□□ -0.09
Col8a1Q00780 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Col8a1Q00780 Gm2651-201ENSMUST00000203560 838 ntBASIC14.49□□□□□ -0.09
Col8a1Q00780 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC14.49□□□□□ -0.09
Col8a1Q00780 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.49□□□□□ -0.09
Col8a1Q00780 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14.49□□□□□ -0.09
Col8a1Q00780 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Col8a1Q00780 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Col8a1Q00780 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col8a1Q00780 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Col8a1Q00780 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 AC154621.1-201ENSMUST00000226155 1119 ntBASIC14.48□□□□□ -0.09
Col8a1Q00780 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Col8a1Q00780 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Col8a1Q00780 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC14.48□□□□□ -0.09
Col8a1Q00780 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Col8a1Q00780 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 54.1 ms