Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Gm11860-201ENSMUST00000122346 1010 ntBASIC14.74□□□□□ -0.05
Nkx3-1P97436 Gm37722-201ENSMUST00000193757 208 ntBASIC14.74□□□□□ -0.05
Nkx3-1P97436 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Nkx3-1P97436 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Gm19721-201ENSMUST00000195284 1764 ntBASIC14.73□□□□□ -0.05
Nkx3-1P97436 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Mir770-201ENSMUST00000103252 94 ntBASIC14.73□□□□□ -0.05
Nkx3-1P97436 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Nkx3-1P97436 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Rarb-207ENSMUST00000225921 2756 ntBASIC14.72□□□□□ -0.05
Nkx3-1P97436 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Nkx3-1P97436 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.71□□□□□ -0.05
Nkx3-1P97436 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
Nkx3-1P97436 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Mir3081-201ENSMUST00000175305 84 ntBASIC14.71□□□□□ -0.05
Nkx3-1P97436 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.71□□□□□ -0.05
Nkx3-1P97436 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Nkx3-1P97436 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Nkx3-1P97436 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Nkx3-1P97436 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
Nkx3-1P97436 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Nkx3-1P97436 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 AC154855.1-201ENSMUST00000227353 1458 ntBASIC14.7□□□□□ -0.06
Nkx3-1P97436 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Nkx3-1P97436 Gm27742-201ENSMUST00000184667 60 ntBASIC14.7□□□□□ -0.06
Nkx3-1P97436 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms