Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Shmt1P50431 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC18.03■□□□□ 0.48
Shmt1P50431 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.03■□□□□ 0.48
Shmt1P50431 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.03■□□□□ 0.48
Shmt1P50431 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Shmt1P50431 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Shmt1P50431 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Shmt1P50431 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Shmt1P50431 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Shmt1P50431 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Shmt1P50431 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Shmt1P50431 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.03■□□□□ 0.48
Shmt1P50431 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Shmt1P50431 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Shmt1P50431 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.02■□□□□ 0.48
Shmt1P50431 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Shmt1P50431 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.02■□□□□ 0.48
Shmt1P50431 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.02■□□□□ 0.48
Shmt1P50431 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Shmt1P50431 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.02■□□□□ 0.48
Shmt1P50431 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Shmt1P50431 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Shmt1P50431 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Shmt1P50431 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Shmt1P50431 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Shmt1P50431 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Shmt1P50431 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Shmt1P50431 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Shmt1P50431 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Shmt1P50431 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Shmt1P50431 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Shmt1P50431 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.01■□□□□ 0.47
Shmt1P50431 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Shmt1P50431 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18■□□□□ 0.47
Shmt1P50431 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Shmt1P50431 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
Shmt1P50431 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC18■□□□□ 0.47
Shmt1P50431 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC18■□□□□ 0.47
Shmt1P50431 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Shmt1P50431 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC18■□□□□ 0.47
Shmt1P50431 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC17.99■□□□□ 0.47
Shmt1P50431 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.99■□□□□ 0.47
Shmt1P50431 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Shmt1P50431 Actl10-202ENSMUST00000226583 1501 ntBASIC17.99■□□□□ 0.47
Shmt1P50431 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.99■□□□□ 0.47
Shmt1P50431 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 Gm10013-201ENSMUST00000106074 672 ntBASIC17.99■□□□□ 0.47
Shmt1P50431 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.99■□□□□ 0.47
Shmt1P50431 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Shmt1P50431 Mir1668-201ENSMUST00000184114 107 ntBASIC17.99■□□□□ 0.47
Shmt1P50431 Gm21362-201ENSMUST00000194272 928 ntBASIC17.99■□□□□ 0.47
Shmt1P50431 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
Shmt1P50431 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.99■□□□□ 0.47
Shmt1P50431 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Shmt1P50431 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Shmt1P50431 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Shmt1P50431 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.98■□□□□ 0.47
Shmt1P50431 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms