Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Gm10849-201ENSMUST00000100397 618 ntBASIC20.41■□□□□ 0.86
Rfx1P48377 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Rfx1P48377 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Rfx1P48377 Gm13148-201ENSMUST00000118892 745 ntBASIC20.41■□□□□ 0.86
Rfx1P48377 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Rfx1P48377 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
Rfx1P48377 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx1P48377 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC20.4■□□□□ 0.86
Rfx1P48377 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.4■□□□□ 0.86
Rfx1P48377 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Rfx1P48377 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Rfx1P48377 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Rfx1P48377 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx1P48377 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC20.39■□□□□ 0.86
Rfx1P48377 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Rfx1P48377 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Rfx1P48377 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Rfx1P48377 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Rfx1P48377 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Rfx1P48377 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
Rfx1P48377 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Rfx1P48377 Gm8839-201ENSMUST00000121279 1645 ntBASIC20.39■□□□□ 0.86
Rfx1P48377 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx1P48377 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx1P48377 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Rfx1P48377 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.39■□□□□ 0.85
Rfx1P48377 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC20.39■□□□□ 0.85
Rfx1P48377 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Rfx1P48377 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Rfx1P48377 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx1P48377 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx1P48377 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Rfx1P48377 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx1P48377 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Rfx1P48377 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx1P48377 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx1P48377 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx1P48377 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC20.39■□□□□ 0.85
Rfx1P48377 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Rfx1P48377 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Rfx1P48377 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC20.38■□□□□ 0.85
Rfx1P48377 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx1P48377 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20.37■□□□□ 0.85
Rfx1P48377 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Rfx1P48377 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.37■□□□□ 0.85
Rfx1P48377 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
Rfx1P48377 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.37■□□□□ 0.85
Rfx1P48377 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Rfx1P48377 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx1P48377 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms