Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msx1P13297 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msx1P13297 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msx1P13297 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.17■□□□□ 0.18
Msx1P13297 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Msx1P13297 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Msx1P13297 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msx1P13297 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.16■□□□□ 0.18
Msx1P13297 Gm17661-201ENSMUST00000170317 270 ntBASIC16.16■□□□□ 0.18
Msx1P13297 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC16.16■□□□□ 0.18
Msx1P13297 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.16■□□□□ 0.18
Msx1P13297 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Gm7461-201ENSMUST00000058918 827 ntBASIC16.16■□□□□ 0.18
Msx1P13297 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Msx1P13297 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
Msx1P13297 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Msx1P13297 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Gm11434-201ENSMUST00000122379 629 ntBASIC16.15■□□□□ 0.18
Msx1P13297 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC16.15■□□□□ 0.18
Msx1P13297 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Msx1P13297 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Msx1P13297 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC16.14■□□□□ 0.17
Msx1P13297 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.14■□□□□ 0.17
Msx1P13297 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Msx1P13297 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Crls1-204ENSMUST00000124836 1267 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC16.14■□□□□ 0.17
Msx1P13297 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Msx1P13297 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Msx1P13297 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Msx1P13297 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Msx1P13297 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Msx1P13297 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Msx1P13297 Gm16061-201ENSMUST00000122167 857 ntBASIC16.13■□□□□ 0.17
Msx1P13297 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC16.13■□□□□ 0.17
Msx1P13297 Gm9694-201ENSMUST00000193347 1189 ntBASIC16.13■□□□□ 0.17
Msx1P13297 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
Msx1P13297 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Msx1P13297 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Msx1P13297 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Msx1P13297 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.13■□□□□ 0.17
Msx1P13297 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Msx1P13297 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Msx1P13297 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Msx1P13297 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Msx1P13297 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Msx1P13297 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Msx1P13297 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Msx1P13297 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Msx1P13297 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Msx1P13297 Gm42900-201ENSMUST00000197184 2167 ntBASIC16.12■□□□□ 0.17
Msx1P13297 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC16.12■□□□□ 0.17
Msx1P13297 AC154532.1-201ENSMUST00000227860 965 ntBASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms