Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Chd3B1AR17 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Chd3B1AR17 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC16.7■□□□□ 0.26
Chd3B1AR17 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Chd3B1AR17 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.7■□□□□ 0.26
Chd3B1AR17 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Chd3B1AR17 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Chd3B1AR17 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Chd3B1AR17 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC16.69■□□□□ 0.26
Chd3B1AR17 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC16.69■□□□□ 0.26
Chd3B1AR17 Wnt10b-204ENSMUST00000226655 1807 ntBASIC16.69■□□□□ 0.26
Chd3B1AR17 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Gm44832-201ENSMUST00000208849 2303 ntBASIC16.69■□□□□ 0.26
Chd3B1AR17 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Chd3B1AR17 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Chd3B1AR17 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 AL590614.2-201ENSMUST00000225374 1937 ntBASIC16.68■□□□□ 0.26
Chd3B1AR17 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC16.68■□□□□ 0.26
Chd3B1AR17 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC16.68■□□□□ 0.26
Chd3B1AR17 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC16.68■□□□□ 0.26
Chd3B1AR17 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Chd3B1AR17 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Chd3B1AR17 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Chd3B1AR17 Mir770-201ENSMUST00000103252 94 ntBASIC16.67■□□□□ 0.26
Chd3B1AR17 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC16.67■□□□□ 0.26
Chd3B1AR17 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Chd3B1AR17 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Gm17808-201ENSMUST00000200859 894 ntBASIC16.66■□□□□ 0.26
Chd3B1AR17 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.66■□□□□ 0.26
Chd3B1AR17 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC16.66■□□□□ 0.26
Chd3B1AR17 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.66■□□□□ 0.26
Chd3B1AR17 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Chd3B1AR17 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Chd3B1AR17 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC16.66■□□□□ 0.26
Chd3B1AR17 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Chd3B1AR17 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Chd3B1AR17 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Chd3B1AR17 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Chd3B1AR17 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Gm26039-201ENSMUST00000158152 144 ntBASIC16.65■□□□□ 0.26
Chd3B1AR17 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC16.65■□□□□ 0.26
Chd3B1AR17 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chd3B1AR17 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms