Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Cdc34b-202ENSMUST00000188741 1252 ntBASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Gm37820-201ENSMUST00000194021 2147 ntBASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trbv3A0A0A6YYE2 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Gm6139-201ENSMUST00000079261 882 ntBASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trbv3A0A0A6YYE2 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trbv3A0A0A6YYE2 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trbv3A0A0A6YYE2 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms