Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm13793-201ENSMUST00000124214 438 ntTSL 2 BASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm24348-201ENSMUST00000158710 130 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm27783-201ENSMUST00000183534 105 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Mir6916-201ENSMUST00000184514 63 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm29330-201ENSMUST00000190032 699 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm29140-201ENSMUST00000190187 476 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm1833-201ENSMUST00000191608 682 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm44425-201ENSMUST00000203739 429 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm45315-201ENSMUST00000209283 333 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm46367-202ENSMUST00000222771 501 ntTSL 5 BASIC2.91□□□□□ -1.94
Col28a1Q2UY11 AC115735.1-201ENSMUST00000226633 350 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm26066-201ENSMUST00000083385 109 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Mir21a-201ENSMUST00000083521 92 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm24817-201ENSMUST00000093672 105 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Fam111a-203ENSMUST00000144662 3912 ntAPPRIS P3 TSL 5 BASIC2.91□□□□□ -1.94
Col28a1Q2UY11 6720427I07Rik-201ENSMUST00000181490 2300 ntBASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Olfr235-203ENSMUST00000214551 2240 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Gm15097-202ENSMUST00000112741 1953 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
Col28a1Q2UY11 Olfr789-202ENSMUST00000213992 4421 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.94
Col28a1Q2UY11 Gm12080-201ENSMUST00000119821 1883 ntBASIC2.9□□□□□ -1.94
Col28a1Q2UY11 Muc16-204ENSMUST00000208663 25437 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.94
Col28a1Q2UY11 Gm15319-201ENSMUST00000084046 2522 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
Col28a1Q2UY11 Gm38083-201ENSMUST00000194758 3498 ntBASIC2.9□□□□□ -1.94
Col28a1Q2UY11 Adgre4-201ENSMUST00000025004 3491 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
Col28a1Q2UY11 Vmn1r172-202ENSMUST00000173101 9109 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
Col28a1Q2UY11 Tlr3-205ENSMUST00000209772 4096 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Adgrg4-204ENSMUST00000153784 9329 ntAPPRIS P5 TSL 5 BASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm22496-201ENSMUST00000104493 88 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Mir291a-201ENSMUST00000104815 82 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm11115-201ENSMUST00000113255 54 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Rpl30-ps5-201ENSMUST00000117104 361 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm14838-201ENSMUST00000118913 248 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm11785-201ENSMUST00000120165 601 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm12721-201ENSMUST00000120621 268 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm13345-201ENSMUST00000121928 228 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm15961-201ENSMUST00000156090 266 ntTSL 3 BASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm23892-201ENSMUST00000158105 130 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm17117-201ENSMUST00000163665 299 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Scgb2b23-ps-202ENSMUST00000167012 516 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm25175-201ENSMUST00000178712 79 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Ska2l-ps-201ENSMUST00000186208 360 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm44844-201ENSMUST00000207242 336 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm45513-201ENSMUST00000210228 376 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 AC158798.1-201ENSMUST00000219714 711 ntTSL 5 BASIC2.9□□□□□ -1.95
Col28a1Q2UY11 AC160984.2-201ENSMUST00000224927 791 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm42448-201ENSMUST00000197122 2644 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 AC115047.2-201ENSMUST00000214421 1848 ntBASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Gm14440-202ENSMUST00000109051 3382 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
Col28a1Q2UY11 Vmn1r178-204ENSMUST00000226640 2282 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm23705-201ENSMUST00000104370 130 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm13457-201ENSMUST00000117885 267 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm15760-201ENSMUST00000119553 283 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm15190-201ENSMUST00000120855 276 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm11384-201ENSMUST00000121376 303 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm25283-201ENSMUST00000157272 77 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm22113-201ENSMUST00000158343 104 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm23380-201ENSMUST00000158448 103 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm24487-201ENSMUST00000178017 63 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm21893-201ENSMUST00000179119 397 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Hmgb1-rs16-201ENSMUST00000185927 613 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm9696-202ENSMUST00000191541 830 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm18956-201ENSMUST00000192857 480 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Mir7661-201ENSMUST00000197023 61 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Rpl18a-ps3-201ENSMUST00000198938 171 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm43600-201ENSMUST00000202134 223 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm19244-201ENSMUST00000204340 253 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 AC158395.1-201ENSMUST00000227206 452 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm22249-201ENSMUST00000082485 136 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Mir184-201ENSMUST00000083662 69 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Gm23731-201ENSMUST00000083749 107 ntBASIC2.89□□□□□ -1.95
Col28a1Q2UY11 P2ry10-202ENSMUST00000118666 2757 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
Col28a1Q2UY11 Olfr785-201ENSMUST00000204402 2014 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Olfr1093-202ENSMUST00000213354 2240 ntAPPRIS P1 TSL 3 BASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm650-201ENSMUST00000144428 1551 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm24119-201ENSMUST00000103979 246 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm23841-201ENSMUST00000116951 114 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm9119-201ENSMUST00000118866 495 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Rps13-ps8-201ENSMUST00000118906 401 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm8260-201ENSMUST00000119230 353 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Rpl31-ps6-201ENSMUST00000119959 378 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm15037-201ENSMUST00000120358 259 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Etaa1os-201ENSMUST00000140161 550 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm25373-201ENSMUST00000158156 115 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Vmn1r-ps83-201ENSMUST00000172677 705 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm20672-201ENSMUST00000176605 261 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Vmn2r-ps132-201ENSMUST00000176738 651 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm28932-201ENSMUST00000186300 357 ntTSL 5 BASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm36946-201ENSMUST00000192706 435 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 AC134596.2-201ENSMUST00000222158 171 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 CT954323.1-201ENSMUST00000222774 229 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 AC129202.2-201ENSMUST00000225123 177 ntBASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Sprr2h-201ENSMUST00000059845 752 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Tlr3-202ENSMUST00000167106 4093 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Rag2-201ENSMUST00000044031 3424 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
Col28a1Q2UY11 Gm43404-201ENSMUST00000200424 2534 ntBASIC2.87□□□□□ -1.95
Col28a1Q2UY11 Vmn2r75-201ENSMUST00000167830 2562 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
Col28a1Q2UY11 Vmn2r-ps69-201ENSMUST00000173382 2565 ntBASIC2.87□□□□□ -1.95
Col28a1Q2UY11 Gm43379-201ENSMUST00000196253 7726 ntBASIC2.87□□□□□ -1.95
Col28a1Q2UY11 Olfr104-ps-202ENSMUST00000215398 2771 ntAPPRIS P5 TSL 5 BASIC2.87□□□□□ -1.95
Col28a1Q2UY11 Gm45130-201ENSMUST00000207574 3388 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 76,532 protein–RNA pairs in 79.2 ms