Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 RNA5SP308-201ENST00000362532 115 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 RNU6-584P-201ENST00000410350 95 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC7.01□□□□□ -1.29
USP39Q53GS9 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC7.01□□□□□ -1.29
USP39Q53GS9 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC7.01□□□□□ -1.29
USP39Q53GS9 UBE2V2P1-201ENST00000434717 398 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 AC128677.1-201ENST00000436016 442 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC7.01□□□□□ -1.29
USP39Q53GS9 XKRYP6-201ENST00000440468 1116 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 XKRYP3-201ENST00000442113 1116 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 AC234771.2-201ENST00000445718 597 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC7.01□□□□□ -1.29
USP39Q53GS9 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC7.01□□□□□ -1.29
USP39Q53GS9 RPL7AP71-201ENST00000451120 739 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 MTCO2P6-201ENST00000463134 685 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC7.01□□□□□ -1.29
USP39Q53GS9 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC7.01□□□□□ -1.29
USP39Q53GS9 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC7.01□□□□□ -1.29
USP39Q53GS9 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC7.01□□□□□ -1.29
USP39Q53GS9 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC7.01□□□□□ -1.29
USP39Q53GS9 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC7.01□□□□□ -1.29
USP39Q53GS9 AC096571.1-202ENST00000506634 735 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 PVT1-214ENST00000522875 922 ntTSL 5 BASIC7.01□□□□□ -1.29
USP39Q53GS9 OR7E154P-201ENST00000525174 932 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 OR9G2P-201ENST00000533326 880 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC7.01□□□□□ -1.29
USP39Q53GS9 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC7.01□□□□□ -1.29
USP39Q53GS9 CD24P2-201ENST00000565486 219 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC7.01□□□□□ -1.29
USP39Q53GS9 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC7.01□□□□□ -1.29
USP39Q53GS9 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
USP39Q53GS9 AC023513.1-201ENST00000604396 691 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 MIR6778-201ENST00000617912 73 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 AC005514.1-201ENST00000623521 208 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 AC011471.4-201ENST00000638271 216 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC7.01□□□□□ -1.29
USP39Q53GS9 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC7.01□□□□□ -1.29
USP39Q53GS9 CDY7P-201ENST00000429883 1604 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 AC061975.5-201ENST00000584928 1441 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC7□□□□□ -1.29
USP39Q53GS9 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
USP39Q53GS9 AL449283.1-201ENST00000602631 3403 ntBASIC7□□□□□ -1.29
USP39Q53GS9 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC7□□□□□ -1.29
USP39Q53GS9 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
USP39Q53GS9 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC7□□□□□ -1.29
USP39Q53GS9 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
USP39Q53GS9 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC7□□□□□ -1.29
USP39Q53GS9 RGS5-202ENST00000367903 934 ntTSL 3 BASIC7□□□□□ -1.29
USP39Q53GS9 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC7□□□□□ -1.29
USP39Q53GS9 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 MIR1204-201ENST00000408388 67 ntBASIC7□□□□□ -1.29
USP39Q53GS9 NPM1P36-201ENST00000415681 835 ntBASIC7□□□□□ -1.29
USP39Q53GS9 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC7□□□□□ -1.29
USP39Q53GS9 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC7□□□□□ -1.29
USP39Q53GS9 AC011242.1-201ENST00000433596 1158 ntBASIC7□□□□□ -1.29
USP39Q53GS9 AL512661.1-201ENST00000434586 1253 ntBASIC7□□□□□ -1.29
USP39Q53GS9 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC7□□□□□ -1.29
USP39Q53GS9 AL121578.2-201ENST00000448797 447 ntBASIC7□□□□□ -1.29
USP39Q53GS9 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC7□□□□□ -1.29
USP39Q53GS9 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC7□□□□□ -1.29
USP39Q53GS9 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 AC010878.1-201ENST00000456500 1047 ntBASIC7□□□□□ -1.29
USP39Q53GS9 CTSLP6-201ENST00000458273 1002 ntBASIC7□□□□□ -1.29
USP39Q53GS9 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 RN7SL170P-201ENST00000487098 295 ntBASIC7□□□□□ -1.29
USP39Q53GS9 AP005202.1-201ENST00000489915 867 ntBASIC7□□□□□ -1.29
USP39Q53GS9 RPL37P23-201ENST00000492641 294 ntBASIC7□□□□□ -1.29
USP39Q53GS9 AGGF1P3-201ENST00000493675 1213 ntBASIC7□□□□□ -1.29
USP39Q53GS9 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC7□□□□□ -1.29
USP39Q53GS9 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 AC027801.3-201ENST00000515049 698 ntBASIC7□□□□□ -1.29
USP39Q53GS9 RN7SKP196-201ENST00000516267 345 ntBASIC7□□□□□ -1.29
USP39Q53GS9 Vault.2-201ENST00000516519 98 ntBASIC7□□□□□ -1.29
USP39Q53GS9 AC120036.3-201ENST00000517826 292 ntBASIC7□□□□□ -1.29
USP39Q53GS9 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC7□□□□□ -1.29
USP39Q53GS9 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC7□□□□□ -1.29
USP39Q53GS9 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC7□□□□□ -1.29
USP39Q53GS9 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC7□□□□□ -1.29
USP39Q53GS9 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC7□□□□□ -1.29
USP39Q53GS9 MIR3154-201ENST00000577829 84 ntBASIC7□□□□□ -1.29
USP39Q53GS9 AC104984.3-201ENST00000581946 546 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC7□□□□□ -1.29
USP39Q53GS9 AC137695.2-201ENST00000603123 754 ntBASIC7□□□□□ -1.29
USP39Q53GS9 5S_rRNA.23-201ENST00000612086 102 ntBASIC7□□□□□ -1.29
USP39Q53GS9 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC7□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms