| Rai1 | Q61818 | Gm12096-201 | ENSMUST00000121149 | 829 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Scgb1b26-ps-201 | ENSMUST00000121845 | 291 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Olfr757-ps1-201 | ENSMUST00000172798 | 413 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Gm23933-201 | ENSMUST00000178405 | 79 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Mir7059-201 | ENSMUST00000184825 | 59 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Gm20058-201 | ENSMUST00000186939 | 284 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Gm6059-201 | ENSMUST00000196903 | 340 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Gm43007-201 | ENSMUST00000197618 | 291 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Gm44391-201 | ENSMUST00000198490 | 93 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Gm42976-201 | ENSMUST00000200313 | 222 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | AL929285.1-201 | ENSMUST00000215522 | 229 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Gm7984-201 | ENSMUST00000060640 | 538 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Gm10780-201 | ENSMUST00000099459 | 285 nt | BASIC | 1.47 | □□□□□ -2.17 | | |
| Rai1 | Q61818 | Rpl30-ps10-201 | ENSMUST00000117119 | 347 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm12191-201 | ENSMUST00000118307 | 348 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm15090-201 | ENSMUST00000118787 | 1196 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Rpl30-ps1-201 | ENSMUST00000119767 | 348 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm16411-201 | ENSMUST00000122164 | 1100 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm15089-201 | ENSMUST00000122332 | 1196 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm26275-201 | ENSMUST00000157101 | 268 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm20415-201 | ENSMUST00000172877 | 423 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm21866-201 | ENSMUST00000178428 | 543 nt | APPRIS P1 BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm21800-201 | ENSMUST00000178559 | 543 nt | APPRIS P1 BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm26189-201 | ENSMUST00000179879 | 107 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm3543-202 | ENSMUST00000179947 | 231 nt | TSL 5 BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm43228-201 | ENSMUST00000200735 | 264 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm44585-201 | ENSMUST00000207150 | 607 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm44693-201 | ENSMUST00000208141 | 460 nt | TSL 3 BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | AC166060.1-201 | ENSMUST00000213509 | 425 nt | TSL 5 BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | AC163289.1-201 | ENSMUST00000215919 | 262 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Tslp-201 | ENSMUST00000025237 | 1133 nt | APPRIS P1 TSL 1 (best) BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Rpl30-ps8-201 | ENSMUST00000076166 | 345 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Olfr730-202 | ENSMUST00000205837 | 4903 nt | APPRIS ALT1 BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm20679-201 | ENSMUST00000177285 | 1402 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l9-201 | ENSMUST00000101891 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm26504-201 | ENSMUST00000102033 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm25170-201 | ENSMUST00000104191 | 129 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm14894-201 | ENSMUST00000117170 | 270 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm14657-201 | ENSMUST00000117461 | 302 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm13794-201 | ENSMUST00000148637 | 468 nt | TSL 3 BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm24154-201 | ENSMUST00000175261 | 130 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm26502-201 | ENSMUST00000177732 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l13-201 | ENSMUST00000177737 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm25350-201 | ENSMUST00000177849 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l15-201 | ENSMUST00000177940 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm23446-201 | ENSMUST00000177977 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l4-201 | ENSMUST00000177982 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm26201-201 | ENSMUST00000178047 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm24711-201 | ENSMUST00000178062 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm24609-201 | ENSMUST00000178166 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm23265-201 | ENSMUST00000178321 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm22812-201 | ENSMUST00000178329 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l3-201 | ENSMUST00000178370 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm26246-201 | ENSMUST00000178388 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm25155-201 | ENSMUST00000178450 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm24760-201 | ENSMUST00000178530 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm22285-201 | ENSMUST00000178576 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm22417-201 | ENSMUST00000178656 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l2-201 | ENSMUST00000178675 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm26270-201 | ENSMUST00000178690 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l16-201 | ENSMUST00000178777 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm23313-201 | ENSMUST00000178931 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l17-201 | ENSMUST00000178936 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm23089-201 | ENSMUST00000178947 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l10-201 | ENSMUST00000179053 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm24153-201 | ENSMUST00000179280 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm25597-201 | ENSMUST00000179388 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l1-201 | ENSMUST00000179518 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm25816-201 | ENSMUST00000179764 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l8-201 | ENSMUST00000179889 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l7-201 | ENSMUST00000179895 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l5-201 | ENSMUST00000179927 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l6-201 | ENSMUST00000179955 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm26188-201 | ENSMUST00000179963 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm26433-201 | ENSMUST00000180227 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snord116l11-201 | ENSMUST00000180312 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm22128-201 | ENSMUST00000180346 | 94 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm29263-201 | ENSMUST00000188718 | 463 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm28384-201 | ENSMUST00000189079 | 463 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm37449-201 | ENSMUST00000193016 | 270 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm7871-201 | ENSMUST00000195346 | 618 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm18658-201 | ENSMUST00000195558 | 270 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm6109-201 | ENSMUST00000223297 | 348 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | n-R5s79-201 | ENSMUST00000083071 | 120 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm25008-201 | ENSMUST00000083809 | 81 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Snora33-201 | ENSMUST00000093556 | 129 nt | BASIC | 1.46 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Skint2-203 | ENSMUST00000106560 | 1678 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Esp31-201 | ENSMUST00000174742 | 1308 nt | APPRIS P1 TSL 1 (best) BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Olfr791-202 | ENSMUST00000217228 | 2502 nt | APPRIS P1 TSL 5 BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | AC117226.1-201 | ENSMUST00000221635 | 3737 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm24049-201 | ENSMUST00000102409 | 100 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Olfr1183-201 | ENSMUST00000102618 | 912 nt | APPRIS P1 BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm13331-201 | ENSMUST00000117500 | 448 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm14913-201 | ENSMUST00000120011 | 1093 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm14815-201 | ENSMUST00000120060 | 488 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm15112-201 | ENSMUST00000120152 | 860 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm14898-201 | ENSMUST00000120202 | 645 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm12372-201 | ENSMUST00000121654 | 768 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Gm24908-201 | ENSMUST00000157294 | 127 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| Rai1 | Q61818 | Olfr306-ps1-201 | ENSMUST00000174677 | 743 nt | BASIC | 1.45 | □□□□□ -2.18 | | |