Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Olfr732-202ENSMUST00000213701 3862 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
Col28a1Q2UY11 Gm26696-201ENSMUST00000181941 2848 ntBASIC3.19□□□□□ -1.9
Col28a1Q2UY11 AC158979.1-201ENSMUST00000223594 2252 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm29674-202ENSMUST00000219664 4083 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Mir667-201ENSMUST00000102441 92 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm2066-201ENSMUST00000118046 389 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm16155-201ENSMUST00000155180 338 ntTSL 3 BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm27592-201ENSMUST00000157729 126 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm23262-201ENSMUST00000158323 168 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm22435-201ENSMUST00000158552 128 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm20484-201ENSMUST00000173738 231 ntTSL 2 BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm22174-201ENSMUST00000175050 125 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm22692-201ENSMUST00000175055 125 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm27634-201ENSMUST00000175060 126 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm22460-201ENSMUST00000175269 124 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm24365-201ENSMUST00000175384 125 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm44310-201ENSMUST00000175424 126 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm22639-201ENSMUST00000175591 125 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm24979-201ENSMUST00000178626 126 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm5935-202ENSMUST00000178986 639 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm9022-202ENSMUST00000183285 483 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm27233-201ENSMUST00000184030 307 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm27743-201ENSMUST00000185136 126 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm29397-201ENSMUST00000185205 333 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm28552-201ENSMUST00000190725 388 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm37338-201ENSMUST00000191986 127 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm8197-201ENSMUST00000192906 363 ntTSL 5 BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm6059-201ENSMUST00000196903 340 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm42665-201ENSMUST00000202100 586 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Olfr278-ps1-201ENSMUST00000205676 238 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 AC107808.1-201ENSMUST00000213260 386 ntTSL 3 BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 5430401H09Rik-201ENSMUST00000218145 1076 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm33654-201ENSMUST00000221704 215 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm46997-201ENSMUST00000222108 217 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 mt-Atp8-201ENSMUST00000082407 204 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm23136-201ENSMUST00000083425 99 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Gm25630-201ENSMUST00000084000 162 ntBASIC3.18□□□□□ -1.9
Col28a1Q2UY11 4932412D23Rik-203ENSMUST00000142270 4105 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Vmn2r81-201ENSMUST00000020547 3276 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Dmd-203ENSMUST00000114000 14910 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Olfr1322-202ENSMUST00000217355 3886 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Col28a1Q2UY11 Klra2-201ENSMUST00000032306 1799 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Olfr792-202ENSMUST00000215436 2113 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm15902-202ENSMUST00000219623 3477 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm9747-201ENSMUST00000023262 2822 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm2093-201ENSMUST00000180518 3526 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Olfr652-202ENSMUST00000215410 4672 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 A630081D01Rik-201ENSMUST00000195842 1833 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Olfr1258-201ENSMUST00000102609 7007 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Clhc1-204ENSMUST00000208530 2062 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Mir693-201ENSMUST00000102187 89 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Trbv16-201ENSMUST00000103274 398 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Igkv13-84-201ENSMUST00000103339 347 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm22023-201ENSMUST00000104354 130 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Olfr160-201ENSMUST00000104875 930 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm22849-201ENSMUST00000157713 307 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm23704-201ENSMUST00000158844 340 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm3851-201ENSMUST00000168653 318 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm29414-201ENSMUST00000185379 448 ntTSL 3 BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm37692-201ENSMUST00000192633 232 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 AC154603.1-201ENSMUST00000224355 313 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 AC154515.2-201ENSMUST00000226093 406 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 AC158982.2-201ENSMUST00000226283 184 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 AC151833.1-201ENSMUST00000227752 574 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Ssxa1-201ENSMUST00000072593 433 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm22304-201ENSMUST00000082688 129 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm23721-201ENSMUST00000083005 107 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm43326-201ENSMUST00000198459 1638 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Zfp85-202ENSMUST00000144183 2312 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm11284-201ENSMUST00000121910 1887 ntBASIC3.17□□□□□ -1.9
Col28a1Q2UY11 Gm37642-201ENSMUST00000193166 1735 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Tfpi-203ENSMUST00000111711 3968 ntTSL 5 BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Olfr476-202ENSMUST00000217173 2539 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm11576-201ENSMUST00000117433 417 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm9157-201ENSMUST00000117673 225 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Rpl36a-ps3-201ENSMUST00000120093 321 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm12771-201ENSMUST00000120246 135 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 1700119I11Rik-201ENSMUST00000122270 336 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm24627-201ENSMUST00000122764 138 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 4930527E20Rik-201ENSMUST00000135700 351 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm24138-201ENSMUST00000157572 114 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 1700022E09Rik-201ENSMUST00000185295 299 ntTSL 5 BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm29262-201ENSMUST00000190084 196 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm28155-201ENSMUST00000191066 151 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Mir691-201ENSMUST00000199719 78 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm43812-201ENSMUST00000200976 581 ntTSL 5 BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 AC142499.1-201ENSMUST00000220036 374 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 AC158606.1-201ENSMUST00000220078 325 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 AC130222.1-201ENSMUST00000221198 256 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm25801-201ENSMUST00000082638 106 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Snord35b-201ENSMUST00000082833 87 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 n-R5s50-201ENSMUST00000083168 111 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm25207-201ENSMUST00000093745 107 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm10811-201ENSMUST00000221985 2448 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Vmn2r42-205ENSMUST00000146278 3086 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 CT025577.1-201ENSMUST00000220862 2846 ntBASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Vmn1r42-203ENSMUST00000227279 4138 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Olfr1243-202ENSMUST00000144885 3148 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Vmn1r80-205ENSMUST00000227755 10455 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Col28a1Q2UY11 Gm14429-201ENSMUST00000121881 2024 ntBASIC3.15□□□□□ -1.9
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms