Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf1Q9EPU0 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Upf1Q9EPU0 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Upf1Q9EPU0 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Gm7222-201ENSMUST00000117512 906 ntBASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.44■□□□□ 0.7
Upf1Q9EPU0 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Upf1Q9EPU0 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Gm5626-201ENSMUST00000222151 1058 ntBASIC19.43■□□□□ 0.7
Upf1Q9EPU0 AC124549.3-201ENSMUST00000225541 367 ntBASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Gm38308-201ENSMUST00000194934 1809 ntBASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Upf1Q9EPU0 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Upf1Q9EPU0 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC19.42■□□□□ 0.7
Upf1Q9EPU0 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf1Q9EPU0 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf1Q9EPU0 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC19.42■□□□□ 0.7
Upf1Q9EPU0 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Upf1Q9EPU0 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf1Q9EPU0 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms