Protein–RNA interactions for Protein: Q9D3E6

Stag1, Cohesin subunit SA-1, mousemouse

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Stag1Q9D3E6 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Stag1Q9D3E6 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Gm28033-201ENSMUST00000184224 96 ntBASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Stag1Q9D3E6 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 AC125311.2-201ENSMUST00000227477 1940 ntBASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC20.35■□□□□ 0.85
Stag1Q9D3E6 AC122351.1-201ENSMUST00000220467 126 ntBASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Stag1Q9D3E6 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Gm14464-201ENSMUST00000119658 1254 ntBASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Gm17971-201ENSMUST00000190239 806 ntBASIC20.34■□□□□ 0.85
Stag1Q9D3E6 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.34■□□□□ 0.85
Stag1Q9D3E6 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Stag1Q9D3E6 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Stag1Q9D3E6 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
Stag1Q9D3E6 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Stag1Q9D3E6 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Stag1Q9D3E6 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Stag1Q9D3E6 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC20.33■□□□□ 0.85
Stag1Q9D3E6 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Stag1Q9D3E6 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.33■□□□□ 0.84
Stag1Q9D3E6 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Stag1Q9D3E6 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Stag1Q9D3E6 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Stag1Q9D3E6 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Stag1Q9D3E6 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Stag1Q9D3E6 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Gm18669-201ENSMUST00000216049 778 ntBASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Rarb-207ENSMUST00000225921 2756 ntBASIC20.32■□□□□ 0.84
Stag1Q9D3E6 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Gm37194-201ENSMUST00000193092 3031 ntBASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Gm27000-201ENSMUST00000182943 842 ntBASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Gm27742-201ENSMUST00000184667 60 ntBASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Gm45328-201ENSMUST00000210942 917 ntBASIC20.31■□□□□ 0.84
Stag1Q9D3E6 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Otx2os1-206ENSMUST00000228153 787 ntBASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Stag1Q9D3E6 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Stag1Q9D3E6 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.3■□□□□ 0.84
Stag1Q9D3E6 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
Stag1Q9D3E6 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Stag1Q9D3E6 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Stag1Q9D3E6 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Stag1Q9D3E6 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms