Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Trim47Q8C0E3 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.94■□□□□ 0.62
Trim47Q8C0E3 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim47Q8C0E3 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Gm10013-201ENSMUST00000106074 672 ntBASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Gm27000-201ENSMUST00000182943 842 ntBASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Trim47Q8C0E3 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Gm18958-201ENSMUST00000174258 762 ntBASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Mir1668-201ENSMUST00000184114 107 ntBASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Gm18101-201ENSMUST00000215769 548 ntBASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim47Q8C0E3 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Gm21559-201ENSMUST00000220638 855 ntBASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Gm8587-201ENSMUST00000076538 843 ntBASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim47Q8C0E3 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms