Protein–RNA interactions for Protein: Q6NSQ5

Sp140, Sp140 nuclear body protein, mousemouse

Predictions only

Length 534 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sp140Q6NSQ5 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.36■□□□□ 0.37
Sp140Q6NSQ5 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sp140Q6NSQ5 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sp140Q6NSQ5 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sp140Q6NSQ5 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sp140Q6NSQ5 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.35■□□□□ 0.37
Sp140Q6NSQ5 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 AC175538.1-201ENSMUST00000225343 1269 ntBASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.34■□□□□ 0.37
Sp140Q6NSQ5 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sp140Q6NSQ5 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sp140Q6NSQ5 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sp140Q6NSQ5 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Sp140Q6NSQ5 Gm7712-202ENSMUST00000222331 1510 ntBASIC17.33■□□□□ 0.37
Sp140Q6NSQ5 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sp140Q6NSQ5 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sp140Q6NSQ5 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.33■□□□□ 0.36
Sp140Q6NSQ5 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Sp140Q6NSQ5 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sp140Q6NSQ5 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
Sp140Q6NSQ5 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sp140Q6NSQ5 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sp140Q6NSQ5 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Sp140Q6NSQ5 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Mir1199-201ENSMUST00000117015 119 ntBASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Gm12085-201ENSMUST00000119263 940 ntBASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sp140Q6NSQ5 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sp140Q6NSQ5 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Gm27011-201ENSMUST00000182352 972 ntBASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 AC153881.1-201ENSMUST00000214448 284 ntBASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sp140Q6NSQ5 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sp140Q6NSQ5 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC17.29■□□□□ 0.36
Sp140Q6NSQ5 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sp140Q6NSQ5 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sp140Q6NSQ5 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sp140Q6NSQ5 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sp140Q6NSQ5 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Sp140Q6NSQ5 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sp140Q6NSQ5 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms