Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Wnt10b-205ENSMUST00000226846 1204 ntBASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Sh3rf1Q69ZI1 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Sh3rf1Q69ZI1 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sh3rf1Q69ZI1 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sh3rf1Q69ZI1 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sh3rf1Q69ZI1 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sh3rf1Q69ZI1 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sh3rf1Q69ZI1 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Sh3rf1Q69ZI1 Mir1199-201ENSMUST00000117015 119 ntBASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Alkbh1-212ENSMUST00000185301 408 ntBASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Gm37166-201ENSMUST00000195473 2474 ntBASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sh3rf1Q69ZI1 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.32■□□□□ 0.36
Sh3rf1Q69ZI1 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sh3rf1Q69ZI1 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms