Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf3aQ3ULJ3 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Gm44771-201ENSMUST00000206975 626 ntBASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Dmtn-210ENSMUST00000228824 2377 ntBASIC17.97■□□□□ 0.47
Upf3aQ3ULJ3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf3aQ3ULJ3 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Upf3aQ3ULJ3 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Upf3aQ3ULJ3 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Upf3aQ3ULJ3 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Upf3aQ3ULJ3 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Mzt1-203ENSMUST00000227948 952 ntBASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Upf3aQ3ULJ3 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms