Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Col8a1Q00780 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Gm12895-201ENSMUST00000122214 226 ntBASIC14.55□□□□□ -0.08
Col8a1Q00780 Gm11594-201ENSMUST00000122313 162 ntBASIC14.55□□□□□ -0.08
Col8a1Q00780 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Gm10052-201ENSMUST00000168019 960 ntBASIC14.55□□□□□ -0.08
Col8a1Q00780 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Col8a1Q00780 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC14.55□□□□□ -0.08
Col8a1Q00780 Gm7729-201ENSMUST00000050143 801 ntBASIC14.55□□□□□ -0.08
Col8a1Q00780 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Col8a1Q00780 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Col8a1Q00780 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
Col8a1Q00780 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Col8a1Q00780 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC14.54□□□□□ -0.08
Col8a1Q00780 Gm15794-201ENSMUST00000120182 631 ntBASIC14.54□□□□□ -0.08
Col8a1Q00780 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Col8a1Q00780 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
Col8a1Q00780 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Col8a1Q00780 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Rncr4-201ENSMUST00000194541 2234 ntBASIC14.54□□□□□ -0.08
Col8a1Q00780 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC14.54□□□□□ -0.08
Col8a1Q00780 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Col8a1Q00780 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col8a1Q00780 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col8a1Q00780 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col8a1Q00780 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Col8a1Q00780 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC14.53□□□□□ -0.08
Col8a1Q00780 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC14.53□□□□□ -0.08
Col8a1Q00780 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC14.53□□□□□ -0.08
Col8a1Q00780 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Col8a1Q00780 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col8a1Q00780 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col8a1Q00780 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col8a1Q00780 Gm18688-201ENSMUST00000204695 1859 ntBASIC14.52□□□□□ -0.08
Col8a1Q00780 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Col8a1Q00780 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Col8a1Q00780 Actl10-202ENSMUST00000226583 1501 ntBASIC14.52□□□□□ -0.08
Col8a1Q00780 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Gm6627-201ENSMUST00000218299 2386 ntBASIC14.52□□□□□ -0.08
Col8a1Q00780 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col8a1Q00780 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC14.52□□□□□ -0.09
Col8a1Q00780 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.52□□□□□ -0.09
Col8a1Q00780 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Col8a1Q00780 Gm18195-201ENSMUST00000207604 706 ntBASIC14.52□□□□□ -0.09
Col8a1Q00780 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 AC124603.1-201ENSMUST00000223843 308 ntBASIC14.52□□□□□ -0.09
Col8a1Q00780 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC14.52□□□□□ -0.09
Col8a1Q00780 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC14.52□□□□□ -0.09
Col8a1Q00780 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Col8a1Q00780 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col8a1Q00780 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms