Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Gm9954-202ENSMUST00000198686 4725 ntBASIC14.78□□□□□ -0.04
Nkx3-1P97436 Gm42900-201ENSMUST00000197184 2167 ntBASIC14.78□□□□□ -0.04
Nkx3-1P97436 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Fam105a-203ENSMUST00000226170 3043 ntBASIC14.78□□□□□ -0.04
Nkx3-1P97436 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Gm28033-201ENSMUST00000184224 96 ntBASIC14.78□□□□□ -0.04
Nkx3-1P97436 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Nkx3-1P97436 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Nkx3-1P97436 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
Nkx3-1P97436 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC14.77□□□□□ -0.04
Nkx3-1P97436 Actl10-202ENSMUST00000226583 1501 ntBASIC14.77□□□□□ -0.04
Nkx3-1P97436 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Nkx3-1P97436 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC14.77□□□□□ -0.04
Nkx3-1P97436 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Nkx3-1P97436 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Nkx3-1P97436 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Nkx3-1P97436 Gm6623-201ENSMUST00000173570 544 ntBASIC14.77□□□□□ -0.05
Nkx3-1P97436 Gm18958-201ENSMUST00000174258 762 ntBASIC14.77□□□□□ -0.05
Nkx3-1P97436 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Nkx3-1P97436 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Dmtn-210ENSMUST00000228824 2377 ntBASIC14.76□□□□□ -0.05
Nkx3-1P97436 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Nkx3-1P97436 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 AC123834.2-201ENSMUST00000224038 2340 ntBASIC14.75□□□□□ -0.05
Nkx3-1P97436 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Mir8112-201ENSMUST00000184382 131 ntBASIC14.75□□□□□ -0.05
Nkx3-1P97436 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Gm18669-201ENSMUST00000216049 778 ntBASIC14.75□□□□□ -0.05
Nkx3-1P97436 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Gm43272-201ENSMUST00000200599 1584 ntBASIC14.75□□□□□ -0.05
Nkx3-1P97436 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Nkx3-1P97436 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms