Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Traf1P39428 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Traf1P39428 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Traf1P39428 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Traf1P39428 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Traf1P39428 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Traf1P39428 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Traf1P39428 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Traf1P39428 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Traf1P39428 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Traf1P39428 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Traf1P39428 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Traf1P39428 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC19.76■□□□□ 0.75
Traf1P39428 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.76■□□□□ 0.75
Traf1P39428 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC19.76■□□□□ 0.75
Traf1P39428 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.76■□□□□ 0.75
Traf1P39428 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.76■□□□□ 0.75
Traf1P39428 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.76■□□□□ 0.75
Traf1P39428 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.76■□□□□ 0.75
Traf1P39428 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Traf1P39428 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Traf1P39428 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Traf1P39428 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.75■□□□□ 0.75
Traf1P39428 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Traf1P39428 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC19.75■□□□□ 0.75
Traf1P39428 Gm9013-201ENSMUST00000132939 882 ntBASIC19.75■□□□□ 0.75
Traf1P39428 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC19.75■□□□□ 0.75
Traf1P39428 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Traf1P39428 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Traf1P39428 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.75■□□□□ 0.75
Traf1P39428 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Traf1P39428 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Traf1P39428 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC19.74■□□□□ 0.75
Traf1P39428 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Traf1P39428 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Traf1P39428 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Traf1P39428 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Gm33142-201ENSMUST00000193913 867 ntBASIC19.74■□□□□ 0.75
Traf1P39428 Gm7367-201ENSMUST00000057611 492 ntBASIC19.74■□□□□ 0.75
Traf1P39428 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Traf1P39428 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Traf1P39428 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Traf1P39428 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Traf1P39428 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.74■□□□□ 0.75
Traf1P39428 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Traf1P39428 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Traf1P39428 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.73■□□□□ 0.75
Traf1P39428 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Traf1P39428 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Traf1P39428 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Traf1P39428 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.73■□□□□ 0.75
Traf1P39428 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.73■□□□□ 0.75
Traf1P39428 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC19.73■□□□□ 0.75
Traf1P39428 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC19.73■□□□□ 0.75
Traf1P39428 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Traf1P39428 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Traf1P39428 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Traf1P39428 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Traf1P39428 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Traf1P39428 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms