Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Sdc1P18828 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Sdc1P18828 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC14.11□□□□□ -0.15
Sdc1P18828 Mir8112-201ENSMUST00000184382 131 ntBASIC14.11□□□□□ -0.15
Sdc1P18828 Gm38205-201ENSMUST00000192243 258 ntBASIC14.11□□□□□ -0.15
Sdc1P18828 AC160393.1-201ENSMUST00000218378 1279 ntBASIC14.11□□□□□ -0.15
Sdc1P18828 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Sdc1P18828 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Sdc1P18828 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Sdc1P18828 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Sdc1P18828 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC14.1□□□□□ -0.15
Sdc1P18828 Gm22325-201ENSMUST00000158904 308 ntBASIC14.1□□□□□ -0.15
Sdc1P18828 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC14.1□□□□□ -0.15
Sdc1P18828 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC14.1□□□□□ -0.15
Sdc1P18828 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC14.1□□□□□ -0.15
Sdc1P18828 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Sdc1P18828 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Sdc1P18828 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Sdc1P18828 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sdc1P18828 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Sdc1P18828 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Gm19430-201ENSMUST00000193847 2137 ntBASIC14.09□□□□□ -0.15
Sdc1P18828 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.09□□□□□ -0.15
Sdc1P18828 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Sdc1P18828 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Gm5522-201ENSMUST00000189483 1242 ntBASIC14.09□□□□□ -0.15
Sdc1P18828 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Sdc1P18828 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
Sdc1P18828 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sdc1P18828 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Sdc1P18828 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC14.08□□□□□ -0.15
Sdc1P18828 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC14.08□□□□□ -0.16
Sdc1P18828 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC14.08□□□□□ -0.16
Sdc1P18828 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC14.08□□□□□ -0.16
Sdc1P18828 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC14.08□□□□□ -0.16
Sdc1P18828 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Sdc1P18828 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC14.08□□□□□ -0.16
Sdc1P18828 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sdc1P18828 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC14.07□□□□□ -0.16
Sdc1P18828 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Sdc1P18828 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC14.07□□□□□ -0.16
Sdc1P18828 AC133083.1-201ENSMUST00000221736 2209 ntBASIC14.07□□□□□ -0.16
Sdc1P18828 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
Sdc1P18828 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Gm16011-201ENSMUST00000121567 2662 ntBASIC14.07□□□□□ -0.16
Sdc1P18828 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC14.07□□□□□ -0.16
Sdc1P18828 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sdc1P18828 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms