Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.81■□□□□ 0.6
Msh3P13705 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
Msh3P13705 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh3P13705 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh3P13705 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.8■□□□□ 0.6
Msh3P13705 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.8■□□□□ 0.6
Msh3P13705 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh3P13705 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh3P13705 Gm5417-201ENSMUST00000079706 384 ntBASIC18.8■□□□□ 0.6
Msh3P13705 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.8■□□□□ 0.6
Msh3P13705 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Msh3P13705 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Msh3P13705 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh3P13705 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh3P13705 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh3P13705 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Msh3P13705 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Msh3P13705 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Msh3P13705 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Msh3P13705 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.79■□□□□ 0.6
Msh3P13705 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.79■□□□□ 0.6
Msh3P13705 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.79■□□□□ 0.6
Msh3P13705 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Msh3P13705 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msh3P13705 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msh3P13705 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC18.78■□□□□ 0.6
Msh3P13705 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC18.78■□□□□ 0.6
Msh3P13705 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Msh3P13705 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
Msh3P13705 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Msh3P13705 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.78■□□□□ 0.6
Msh3P13705 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Msh3P13705 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.78■□□□□ 0.6
Msh3P13705 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Msh3P13705 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh3P13705 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msh3P13705 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msh3P13705 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Msh3P13705 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Msh3P13705 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.77■□□□□ 0.6
Msh3P13705 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Msh3P13705 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Msh3P13705 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Msh3P13705 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Msh3P13705 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msh3P13705 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msh3P13705 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Msh3P13705 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Msh3P13705 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Msh3P13705 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Msh3P13705 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Msh3P13705 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC18.76■□□□□ 0.59
Msh3P13705 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh3P13705 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Msh3P13705 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msh3P13705 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Msh3P13705 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Msh3P13705 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Msh3P13705 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msh3P13705 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msh3P13705 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Msh3P13705 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msh3P13705 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Msh3P13705 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Msh3P13705 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms