Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC16.19■□□□□ 0.18
Lire1P11260 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lire1P11260 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lire1P11260 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Lire1P11260 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Lire1P11260 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lire1P11260 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Lire1P11260 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Gm11643-201ENSMUST00000119578 864 ntBASIC16.18■□□□□ 0.18
Lire1P11260 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
Lire1P11260 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Lire1P11260 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Lire1P11260 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Lire1P11260 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lire1P11260 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Lire1P11260 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC16.17■□□□□ 0.18
Lire1P11260 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.17■□□□□ 0.18
Lire1P11260 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC16.17■□□□□ 0.18
Lire1P11260 Gm10698-201ENSMUST00000182663 604 ntBASIC16.17■□□□□ 0.18
Lire1P11260 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.17■□□□□ 0.18
Lire1P11260 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC16.17■□□□□ 0.18
Lire1P11260 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC16.17■□□□□ 0.18
Lire1P11260 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
Lire1P11260 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.17■□□□□ 0.18
Lire1P11260 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.17■□□□□ 0.18
Lire1P11260 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lire1P11260 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Lire1P11260 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Lire1P11260 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.16■□□□□ 0.18
Lire1P11260 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Lire1P11260 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Lire1P11260 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lire1P11260 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC16.15■□□□□ 0.18
Lire1P11260 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.15■□□□□ 0.18
Lire1P11260 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Lire1P11260 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.15■□□□□ 0.18
Lire1P11260 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC16.15■□□□□ 0.18
Lire1P11260 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Lire1P11260 AC160393.1-201ENSMUST00000218378 1279 ntBASIC16.15■□□□□ 0.18
Lire1P11260 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Lire1P11260 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Lire1P11260 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Lire1P11260 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Lire1P11260 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lire1P11260 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lire1P11260 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lire1P11260 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lire1P11260 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.14■□□□□ 0.17
Lire1P11260 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Lire1P11260 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Lire1P11260 Gm2399-201ENSMUST00000104944 225 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms