Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Mir5122-201ENSMUST00000175004 89 ntBASIC18.63■□□□□ 0.57
Chmp6P0C0A3 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Gm37055-201ENSMUST00000191866 133 ntBASIC18.62■□□□□ 0.57
Chmp6P0C0A3 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Chmp6P0C0A3 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Gm5417-201ENSMUST00000079706 384 ntBASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chmp6P0C0A3 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Timm23-208ENSMUST00000226683 750 ntBASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chmp6P0C0A3 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chmp6P0C0A3 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms