Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm7461-201ENSMUST00000058918 827 ntBASIC20.43■□□□□ 0.86
Col3a1P08121 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col3a1P08121 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
Col3a1P08121 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
Col3a1P08121 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col3a1P08121 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
Col3a1P08121 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Col3a1P08121 AL590614.2-201ENSMUST00000225374 1937 ntBASIC20.41■□□□□ 0.86
Col3a1P08121 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC20.41■□□□□ 0.86
Col3a1P08121 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col3a1P08121 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Col3a1P08121 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col3a1P08121 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC20.4■□□□□ 0.86
Col3a1P08121 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Col3a1P08121 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col3a1P08121 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC20.4■□□□□ 0.86
Col3a1P08121 Gm29707-201ENSMUST00000196325 491 ntBASIC20.4■□□□□ 0.86
Col3a1P08121 Gm18421-201ENSMUST00000204122 625 ntBASIC20.4■□□□□ 0.86
Col3a1P08121 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col3a1P08121 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col3a1P08121 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Col3a1P08121 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col3a1P08121 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col3a1P08121 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col3a1P08121 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col3a1P08121 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col3a1P08121 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.39■□□□□ 0.85
Col3a1P08121 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC20.39■□□□□ 0.85
Col3a1P08121 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col3a1P08121 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
Col3a1P08121 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC20.39■□□□□ 0.85
Col3a1P08121 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col3a1P08121 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col3a1P08121 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col3a1P08121 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Col3a1P08121 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col3a1P08121 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Col3a1P08121 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col3a1P08121 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col3a1P08121 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col3a1P08121 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col3a1P08121 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC20.37■□□□□ 0.85
Col3a1P08121 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col3a1P08121 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col3a1P08121 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col3a1P08121 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col3a1P08121 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col3a1P08121 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC20.37■□□□□ 0.85
Col3a1P08121 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC20.37■□□□□ 0.85
Col3a1P08121 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Col3a1P08121 Gm34391-201ENSMUST00000203706 907 ntBASIC20.37■□□□□ 0.85
Col3a1P08121 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
Col3a1P08121 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col3a1P08121 Gm37519-201ENSMUST00000191687 2210 ntBASIC20.36■□□□□ 0.85
Col3a1P08121 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Col3a1P08121 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC20.36■□□□□ 0.85
Col3a1P08121 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC20.36■□□□□ 0.85
Col3a1P08121 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms