Protein–RNA interactions for Protein: O88895

Hdac3, Histone deacetylase 3, mousemouse

Predictions only

Length 424 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hdac3O88895 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC15.3■□□□□ 0.04
Hdac3O88895 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC15.3■□□□□ 0.04
Hdac3O88895 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hdac3O88895 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hdac3O88895 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hdac3O88895 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Hdac3O88895 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hdac3O88895 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hdac3O88895 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hdac3O88895 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hdac3O88895 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hdac3O88895 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC15.29■□□□□ 0.04
Hdac3O88895 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Hdac3O88895 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC15.29■□□□□ 0.04
Hdac3O88895 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Gm29257-201ENSMUST00000186115 639 ntBASIC15.29■□□□□ 0.04
Hdac3O88895 Gm29791-202ENSMUST00000207888 369 ntBASIC15.29■□□□□ 0.04
Hdac3O88895 AC135637.1-201ENSMUST00000227750 365 ntBASIC15.29■□□□□ 0.04
Hdac3O88895 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Hdac3O88895 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Hdac3O88895 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
Hdac3O88895 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Hdac3O88895 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC15.28■□□□□ 0.04
Hdac3O88895 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC15.28■□□□□ 0.04
Hdac3O88895 Gm5643-201ENSMUST00000117081 966 ntBASIC15.28■□□□□ 0.04
Hdac3O88895 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Hdac3O88895 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Hdac3O88895 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Hdac3O88895 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Hdac3O88895 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Hdac3O88895 Gm37166-201ENSMUST00000195473 2474 ntBASIC15.27■□□□□ 0.04
Hdac3O88895 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hdac3O88895 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC15.27■□□□□ 0.04
Hdac3O88895 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Hdac3O88895 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hdac3O88895 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Hdac3O88895 Idnk-204ENSMUST00000226010 1898 ntBASIC15.27■□□□□ 0.04
Hdac3O88895 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hdac3O88895 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hdac3O88895 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hdac3O88895 Gm9867-201ENSMUST00000192212 2647 ntBASIC15.27■□□□□ 0.04
Hdac3O88895 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Hdac3O88895 Gm27275-201ENSMUST00000184318 272 ntBASIC15.27■□□□□ 0.04
Hdac3O88895 Gm44878-201ENSMUST00000205812 1295 ntBASIC15.27■□□□□ 0.04
Hdac3O88895 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Hdac3O88895 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.27■□□□□ 0.03
Hdac3O88895 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Hdac3O88895 Nrn1-203ENSMUST00000223611 1443 ntBASIC15.26■□□□□ 0.03
Hdac3O88895 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC15.26■□□□□ 0.03
Hdac3O88895 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Hdac3O88895 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Hdac3O88895 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 77.1 ms