Protein–RNA interactions for Protein: O55055

Trdmt1, tRNA (cytosine(38)-C(5))-methyltransferase, mousemouse

Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trdmt1O55055 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Trdmt1O55055 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trdmt1O55055 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trdmt1O55055 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trdmt1O55055 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trdmt1O55055 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Trdmt1O55055 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trdmt1O55055 AC153889.1-201ENSMUST00000219257 330 ntBASIC18.82■□□□□ 0.6
Trdmt1O55055 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Trdmt1O55055 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trdmt1O55055 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trdmt1O55055 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trdmt1O55055 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC18.82■□□□□ 0.6
Trdmt1O55055 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trdmt1O55055 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.81■□□□□ 0.6
Trdmt1O55055 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trdmt1O55055 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.81■□□□□ 0.6
Trdmt1O55055 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trdmt1O55055 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trdmt1O55055 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trdmt1O55055 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trdmt1O55055 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trdmt1O55055 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Trdmt1O55055 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.81■□□□□ 0.6
Trdmt1O55055 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trdmt1O55055 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trdmt1O55055 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.81■□□□□ 0.6
Trdmt1O55055 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.8■□□□□ 0.6
Trdmt1O55055 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trdmt1O55055 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.8■□□□□ 0.6
Trdmt1O55055 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trdmt1O55055 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trdmt1O55055 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.79■□□□□ 0.6
Trdmt1O55055 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trdmt1O55055 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trdmt1O55055 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trdmt1O55055 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trdmt1O55055 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trdmt1O55055 Gm43347-201ENSMUST00000200226 580 ntBASIC18.79■□□□□ 0.6
Trdmt1O55055 Gm5864-201ENSMUST00000202263 970 ntBASIC18.79■□□□□ 0.6
Trdmt1O55055 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trdmt1O55055 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.79■□□□□ 0.6
Trdmt1O55055 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trdmt1O55055 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trdmt1O55055 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trdmt1O55055 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
Trdmt1O55055 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trdmt1O55055 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trdmt1O55055 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.78■□□□□ 0.6
Trdmt1O55055 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC18.78■□□□□ 0.6
Trdmt1O55055 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.78■□□□□ 0.6
Trdmt1O55055 Gm44450-201ENSMUST00000199528 114 ntBASIC18.78■□□□□ 0.6
Trdmt1O55055 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC18.78■□□□□ 0.6
Trdmt1O55055 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trdmt1O55055 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trdmt1O55055 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trdmt1O55055 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trdmt1O55055 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trdmt1O55055 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trdmt1O55055 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Trdmt1O55055 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trdmt1O55055 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.77■□□□□ 0.6
Trdmt1O55055 Mir8098-201ENSMUST00000184011 137 ntBASIC18.77■□□□□ 0.6
Trdmt1O55055 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trdmt1O55055 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC18.77■□□□□ 0.6
Trdmt1O55055 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trdmt1O55055 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trdmt1O55055 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trdmt1O55055 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trdmt1O55055 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trdmt1O55055 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trdmt1O55055 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trdmt1O55055 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms